S.No.	Authors	Title	Journal	Volume	Pages	Year
1	#Sharma, Surbhi#Pant, Pradeep#Arya, Ranjana#Jayaram, Bhyravabhotla#Kumar Das, Hirendra	Bases immediate upstream of the TATAAT box of the sigma 70 promoter of Escherichia coli significantly influence the activity of a model promoter by altering the bending angle of DNA	Gene	851	146968	2023
2	#Sharma, Dinesh#Sharma, Kopal#Mishra, Akhilesh#Siwach, Priyanka#Mittal, Aditya#Jayaram, B.	Molecular dynamics simulation-based trinucleotide and tetranucleotide level structural and energy characterization of the functional units of genomic DNA	Physical Chemistry Chemical Physics	25	7323-7337	2023
3	#Pant, Pradeep#Pathak, Amita#Jayaram, B.	Bicyclo-DNA mimics with enhanced protein binding affinities: insights from molecular dynamics simulations	Journal of Biomolecular Structure and Dynamics		1-8	2022
4	#Qazi, Sahar#Jit, Bimal Prasad#Das, Abhishek#Karthikeyan, Muthukumarasamy#Saxena, Amit#Ray, M D#Singh, Angel Rajan#Raza, Khalid#Jayaram, B#Sharma, Ashok	BESFA: bioinformatics based evolutionary, structural & functional analysis of prostrate, Placenta, Ovary, Testis, and Embryo (POTE) paralogs	Heliyon	8	e10476	2022
5	#Kiruthika, S#Bhat, Ruchika#Jayaram, B#Vivekanandan, Perumal	A small molecule targeting hepatitis B surface antigen inhibits clinically relevant drug-resistant hepatitis B virus	Journal of Antimicrobial Chemotherapy	77	2120-2124	2022
6	#Pathak, Amita#Jayaram, B.	Seq2Enz: An application of mask BLAST methodology with a new chemical logic of amino acids for improved enzyme function prediction	Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics	1870	140721	2022
7	#Kiruthika, S#Bhat, Ruchika#Dash, Rozaleen#Rathore, Anurag S#Vivekanandan, Perumal#Jayaram, B	A novel piperazine derivative that targets hepatitis B surface antigen effectively inhibits tenofovir resistant hepatitis B virus	Scientific reports	11	11723	2021
8	#Pant, Pradeep#Jayaram, B.	A Rapid Computational Screening of Millions of Molecules to Identify Sequence-Specific DNA Minor Groove Binders via Physicochemical Descriptors	Biophysical and Computational Tools in Drug Discovery		341-367	2021
9	#Jasuja, Ravi#Spencer, Daniel#Jayaraj, Abhilash#Peng, Liming#Krishna, Meenakshi#Lawney, Brian#Patel, Priyank#Jayaram, Bhyravabhotla#Thayer, Kelly M#Beveridge, David L#Bhasin, Shalender	Estradiol induces allosteric coupling and partitioning of sex-hormone-binding globulin monomers among conformational states	iScience	24	102414	2021
10	#Pant, Pradeep#Pathak, Amita#Jayaram, B.	Symmetric Nucleosides as Potent Purine Nucleoside Phosphorylase Inhibitors	The Journal of Physical Chemistry B	125	2856-2862	2021
11	#Amita Pathak#Toran Roy#Avinash Edubilli#B. Jayaram	Author response for "Mask Blast With A New Chemical Logic Of Amino Acids For Improved Protein Function Prediction"				2021
12	#Mishra, Akhilesh#Siwach, Priyanka#Misra, Pallavi#Dhiman, Simran#Pandey, Ashutosh Kumar#Srivastava, Parul#Jayaram, B	Intron exon boundary junctions in human genome have in-built unique structural and energetic signals	Nucleic acids research	49	2674	2021
13	#Holderbach, Stefan#Adam, Lukas#Jayaram, B#Wade, Rebecca C#Mukherjee, Goutam	RASPD+: Fast Protein-Ligand Binding Free Energy Prediction Using Simplified Physicochemical Features	Frontiers in molecular biosciences	7	601065	2020
14	#Singh, Ankita#Shekhar, Shashank#Jayaram, B.	CADD: Some Success Stories from Sanjeevini and the Way Forward	Innovations and Implementations of Computer Aided Drug Discovery Strategies in Rational Drug Design		1-18	2021
15	#Pathak, Amita#Singh, Bhumika#Chaurasia, Dheeraj Kumar#Jayaram, B.	Molecular Simulation–Driven Drug Repurposing for the Identification of Inhibitors Against Non-Structural Proteins of SARS-CoV-2	Methods in Pharmacology and Toxicology		683-713	2021